The "Alberta Protocol" is designed to simplify the analysis of a CT slice at the L3 anatomical level.
If the program is started with the "Alberta Protocol" shortcut from the start menu, a new group of buttons will be available in the Mode menu.
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Once activated, either by starting the program through the "Alberta Protocol" shortcut, or with the configuration interface, the "Modes" menu will have a new group of 4 buttons. Each of these buttons will be associated with one of the protocol's steps.
Clicking on one of these buttons will open a the matching help page to guide you through the actions required for that step. It will also set the modes, tools and windows of the sliceOmatic interface to facilitate these actions.
Once you are familiar enough with the protocol, you can disable the opening of the help pages with the configuration interface.
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You can also access the help pages associated with the new buttons from here: Alberta Protocol man pages.