B: The Mode DLLs

SliceO_2D\Measure.dll

Commands recognized in this library:

Measure: t_measure Delete

Delete all the measurement instrument matching the template "t_measure".

Measure: t_measure Save file_name

Create a script file to re-create all the measurements matching the template "t_measure".

Measure: t_measure Write file_name

Create a text file containing the measures from all the measurements matching the template "t_measure".

Measure: t_frame Caliper name a_x a_y ...

Measure: t_frame Distance name a_x a_y ...

Measure: t_frame Dist_to_Line name a_x a_y ...

Measure: t_frame Profil name a_x a_y ...

Measure: t_frame Protractor name a_x a_y ...

Measure: t_frame ROI name a_x a_y ...

Measure: t_frame Ruler name a_x a_y ...

Create the specified measurement tool named "name" with the parameters "a_x", "a_y" etc on the frame matching "t_frame".

Measure: Propagate [up|down]

Propagate the result from the current frame to the next frame in the group, either up (the default) or down.

Templates:

t_measure is a template for the measure names.

t_frame is a template for the frame names.

SliceO_3D\Contour.dll

System Variables defined in this library:

$CONTOUR_MODDE

(U₈)

Contour mode. 0=points, 1=lines.

$CONTOUR_SUBSAMPLING

(A,U₁₆)

Array of 3 sub-sampling values (x,y and z). Sub-sampling values goes from 0 (no sub-sampling) to 10 (1 pixel every 10).

Commands recognized in this library:

Contour: Mode (line|point)

Assign a value to the $CONTOUR_MODE variable. 0 = point mode, 1 = line mode.

Contour: Sampling (x|y|z) value

Assign values to the x,y and z components of the $CONTOUR_SUBSAMPLING array.

Contour: Compute [line|point]

Compute the contour curve. If the "line" or "point" parameter is present, it define the type of values. Otherwise, the $CONTOUR_MODE variable is used.

SliceO_3D\Shell_....dll

System Variables defined in this library:

$SHELL_LORENSEN_MODDE

(U₈)

Shell reconstruction mode. This is a bit field with the values:

•x01 = Mode Ouside

•x02 = Mode Inside

•x04 = Mode Border

$SHELL_TOMO_MODDE

(U₈)

$SHELL_TOMO_SUBSAMPLING

(A,U₁₆)

Array of 3 sub-sampling values (x,y and z). Sub-sampling values goes from 0 (no sub-sampling) to 10 (1 pixel every 10).

Commands recognized in this library:

Shell: Mode (inside|outside|border) (on|off)

Change the value of the specified bit in both $SHELL_LORENSEN_MODE and $SHELL_TOMO_MODE.

Shell: Sampling (x|y|z) value

Assign values to the x,y and z components of the $SHELL_TOMO_SUBSAMPLING array.

Shell: Compute (TomoVision|Lorensen)

Compute the polygon shell according to the select model.

SliceO_Tag\Flood.dll

Commands recognized in this library:

Flood: 2D cursor

Flood the region under the cursor with the current TAG value.

Flood: 2D x y

Flood the region starting at point x, y of the current frame with the current TAG value.

SliceO_Tag\Histogram Segmentation.dll

Commands recognized in this module:

Histo: Compute

Compute the segmentation.

Histo: t_tag Mode (Off|Manual|Auto)

This will set the mode for all TAGs matching "t_tag".

Histo: t_tag Min value

This will set the lower threshold values for all TAGs matching "t_tag" if these TAGs are in mode manual.

Histo: t_tag Max value

This will set the lower threshold values for all TAGs matching "t_tag" if these TAGs are in mode manual.

Histo: t_tag Peak value

This will assign the peak "value" to all TAGs matching "t_tag" if these TAGs are in mode Auto.

Histo: t_tag Width value

This will assign the width "value" to all TAGs matching "t_tag" if these TAGs are in mode Auto.

Histo: t_tag Slider (*|min|max) (lock|unlock|toggle)

Lock or unlock the sliders for the lower and higher thresholds of the TAGs matching "t_tag"

Templates:

t_tag is a template for the TAG values. It match either the TAG ID ("0" to "256") or the TAG label or "cur" for the current TAG value.

SliceO_Tag\Mask.dll

System Variables defined in this library:

$GEOM_MASK_CAPTURE	(F₃₂)	Capture radius (in pixels). If clicking within this distance of mask's anchor point, the point itself is considered clicked.
$GEOM_MASK_GLOBAL	(U₈)	The masks are either local (=0) or global (=1). This variable is used as default value when creating new masks.
$GEOM_MASK_FILL	(U₈)	The masks are either outlines (=0) or filled (=1). This variable is used as default value when creating new masks.
$GEOM_MASK_NB	(U₁₆)	The number of created masks.

	$GEOM_MASK_LIST	(A,P)	Array of pointers to the masks.
	$GEOM_MASK_ACTIVE	(P)	Pointer to the active mask.

Commands recognized in this library:

Mask: Radius value

Change the default value (=10.0) of the radius for the "Surface" shape.

Mask: t_mask Tag tag_num

Assign the TAG value "tag_num" to all the masks matching the template "t_mask".

Mask: t_mask Mode (global|local|outline|filled)

Assign the TAG value "global/local" or "outline/filled" to all the masks matching the template "t_mask".

Mask: t_mask Delete

Delete all the masks that match the template "t_mask".

Mask: t_mask Save file_name

Create a script file to re-create all the masks matching the template "t_mask".

Mask: t_frame Circle name a_x a_y ...

Mask: t_frame Polygon name a_x a_y ...

Mask: t_frame Quadrant name a_x a_y ...

Mask: t_frame Rectangle name a_x a_y ...

Mask: t_frame Spline name a_x a_y ...

Create the specified masks named "name" with the parameters "a_x", "a_y" etc on the frame matching "t_frame".

Mask: Propagate [up|down]

Propagate the result from the current frame to the next frame in the group, either up (the default) or down.

Templates:

t_mask is a template for the mask names.

t_frame is a template for the frame names.

SliceO_Tag\Morpho.dll

System Variables defined in this library:

$MORPHO_MERGE_MAX	(U₁₆,R)	Maximum number of "Merge" buttons.
$MORPHO_MERGE_NB	(U₁₆)	Actual number of "Merge" buttons.
$MORPHO_MERGE_LIST	(A,U₁₆)	List of the merge parameters (1, ..., n)
$MORPHO_MERGE_CUR	(U₁₆)	Current "Merge" value.
$MORPHO_PARAM_DIST	(A,F₃₂)	Array of "Distance" parameters for the merges.
$MORPHO_PARAM_SURF	(A,F₃₂)	Array of "Surface" parameters for the merges.
$MORPHO_LINE_MODE	(U₈)	Display mode for the watershed lines (0=off, 1=small, 2=thick).
$MORPHO_LINE_COLOR	(C)	Color of the watershed lines.

Commands recognized in this library:

Morpho: Line (off|small|thick)

Assign a value to the variable $MORPHO_LINE_MODE that control the appearance of the watershed lines.

Morpho: Color R G B

Assign a value to the variable $MORPHO_LINE_COLOR that control the color of the watershed lines.

Morpho: Param t_merge surf diff

Assign values to all the elements of $MORPHO_PARAM_SURF and $MORPHO_PARAM_DIST that match the template "t_merge". These variables control the merge of the watersheds.

Morpho: [t_frame] Compute t_merge

Compute the merge of the watersheds for all merge matching the template "t_merge" for all the frames matching the template "t_frame"

Morpho: [t_frame] Close size

Morpho: [t_frame] Dilatation

Morpho: [t_frame] Erosion

Morpho: [t_frame] Open size

Perform Erosion, Dilatation, Open or Close Mathematical Morphology operation on all the frames matching the template "t_frame". The Open and Close operation also have a "size" parameter that control the reach of the operation

Morpho: Propagate [up|down]

Propagate the result from the current frame to the next frame in the group, either up (the default) or down.

Templates:

t_merge is a template for the merge numbers ("1" to "4")

t_frame is a template for the frame names.

SliceO_Tag\Region.dll

System Variables defined in this library:

$REGION_OVERWRITE	(U₈)	Bit field that control how regions overwrite Tag values already present in the pixels (Grow 2D and 3D only): x01 = The region does not overwrite a pixel with a Tag value equal (=) to the current Tag value. x02 = The region does not overwrite a pixel with a Tag value superior (>) to the current Tag value. x04 = The region does not overwrite a pixel with a Tag value inferior (<) to the current Tag value. The default value is x03 (>=)
$REGION_TAG_FLAG	(A,U₈)	Array of bit-field modes for each TAGs. x001 = The lower threshold is on x010 = the hight threshold is on
$REGION_TAG_MIN	(A,F₃₂)	Array of lower threshold values for all TAGs
$REGION_TAG_MAX	(A,F₃₂)	Array of higher threshold values for all TAGs
$REGION_WHEEL_MODE	(U₈)	Mode of the mouse wheel (0=off, 1=, 2= ).
$REGION_PREVIEW_ON	(U₈)	Preview mode (0=off, 1=on).
$REGION_PREVIEW_COLOR	(C)	Color of the preview.

Commands recognized in this library:

Region: Color R G B

Assign a value to the variable $REGION_PREVIEW_COLOR that define the color of the Region Growing preview.

Region: Preview (on|off|toggle)

Assign a value to the variable $REGION_PREVIEW_ON that define if a preview is shown.

Region: Mode (paint|2d|3d)

Set the sub mode of the Region Growing mode. The choices are "paint", "2D or "3d".

Region: Wheel (off|min|max)

Assign a value to the variable $REGION_WHEEL_MODE that define the action of the mouse wheel.

Region: t_tag Min (on|off) [value]

Assign values to the element matching "t_tag" in the variables $REGION_TAG_FLAG and $REGION_TAG_MIN. The $REGION_TAG_FLAG element is defined by the "on/off" parameter, the $REGION_TAG_MIN element is only assigned the vale "value" if the "on/off" parameter is "on". This will set the lower threshold values for all TAGs matching "t_tag".

Region: t_tag Max (on|off) [value]

Assign values to the element matching "t_tag" in the variables $REGION_TAG_FLAG and $REGION_TAG_MAX. The $REGION_TAG_FLAG element is defined by the "on/off" parameter, the $REGION_TAG_MAX element is only assigned the vale "value" if the "on/off" parameter is "on". This will set the lower threshold values for all TAGs matching "t_tag".

Region: t_tag Slider (*|min|max) (lock|unlock|toggle)

Lock or unlock the sliders for the lower and higher thresholds of the TAGs matching "t_tag"

Region: Propagate [up|down]

Propagate the result from the current frame to the next frame in the group, either up (the default) or down.

Templates:

t_tag is a template for the TAG values. It match either the TAG ID ("0" to "256") or the TAG label or "cur" for the current TAG value.

SliceO_Tag\Snake.dll

Commands recognized in this library:

Snake: [t_frame] t_tag Radius value

Assign the radius "value" to all the points of all the Snakes associated with the Tag matching the "t_tag" template on the frames matching the "t_frame" template.

Snake: [t_frame] t_tag Capture value

Assign the capture range "value" to all the Snakes associated with the Tag matching the "t_tag" template on the frames matching the "t_frame" template. The capture range determines how much the Snake can move to latch on the best gradient.

Snake: [t_frame] t_tag Delete value

Delete all the Snakes associated with the Tag matching the "t_tag" template on the frames matching the "t_frame" template.

Snake: [t_frame] t_tag Save file_name

Create a script file to re-create all the snakes matching the tags in the template "t_tag" from the frames matching the template "t_frame".

Snake: t_frame t_tag Create nb_pts radius capture

Create a new snakes on the frame matching "t_frame" for the tag matching t_tag. This new snake will have nb_pts points with a default radius of "radius" and a default capture range of "capture". The points for the snake will be given by a series of "snake: point" commands.

Snake: Point id x y radius

Add a point to a newly created snake.

Snake: Propagate [up|down]

Propagate the result from the current frame to the next frame in the group, either up (the default) or down.

Snake: Tag

Perform the "Snake to Tag" operation on the snake matching the selected TAG value.

Snake: Geom

Perform the "Snake to Geom" operation on the snake matching the selected TAG value.

Templates:

t_tag is a template for the TAG values. It match either the TAG ID ("0" to "256") or the TAG label or "cur" for the current TAG value.

t_frame is a template for the frame names.

SliceO_Tag\Threshold.dll

System Variables defined in this library:

$THRESHOLD_MAX	(U₁₆,R)	Maximum number of threshold sliders (= 4)
$THRESHOLD_NB	(U₁₆)	Actual number of threshold sliders. (Default = $THRESHOLD_MAX)
$THRESHOLD_LIST	(A,U₁₆)	List of the thresholds (1, ..., n)
$THRESHOLD_GLI	(A,F₃₂)	Array of threshold values for each threshold sliders.
$THRESHOLD_TAG	(A,U₁₆)	Array of associated TAG values for each threshold sliders.
$THRESHOLD_WHEEL	(U₈)	Mode of the mouse wheel (0=off, 1 to $THRESHOLD_NB ).

Commands recognized in this library:

Threshold: Threshold id value [tag]

Assign a value to the element "id" of the variables $THRESHOLD_GLI and $THRESHOLD_TAG if "tag" is present.

Threshold: Compute [val_1...]

Compute the segmentation for currently selected images. If threshold values are given, they will be used for the segmentation, otherwise, the values fixed by the interface are used.

Threshold: Slider t_id (lock|unlock|toggle)

Lock or unlock the sliders matching the template "t_id".

Threshold: Wheel (off|1|2...)

Assign a value to the variable $THRESHOLD_WHEEL_MODE that define the action of the mouse wheel.